PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00540.1.g00050.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 213aa    MW: 23949.4 Da    PI: 10.575
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00540.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.91.7e-151152344
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                  ++n+  r  tf kR +g++KK +ELS LC+++++v++++++ 
  Zpz_sc00540.1.g00050.1.sm.mk 11 VSNDAGRRATFNKRCHGLMKKTSELSSLCGVKACVLVYGQNE 52
                                  589999*********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.512151IPR002100Transcription factor, MADS-box
CDDcd002664.34E-21260No hitNo description
SuperFamilySSF554553.27E-19297IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-141251IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRRKLNLHW VSNDAGRRAT FNKRCHGLMK KTSELSSLCG VKACVLVYGQ NEVFPHVWPS  60
VGEARDFLLT SYKATAELHQ WNKKVSHEDF LKKRIKKLQG QVRKWDRESQ GRETSILLHE  120
STVGHRTGLV GVTPVDVIRL REVVERKTKA VQERLKRLGV QPEKQLPPWS STMQMHGLAP  180
LEEPQRNQQD MLTGCSSSAD PSTPSTSGSG GSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971693.12e-45PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLK3XQK22e-45K3XQK2_SETIT; Uncharacterized protein
STRINGSi004188m6e-45(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-25M-type_MADS family protein